Sample Collection, Preparation & Laboratory Methodologies

January 2010

National Integrated Enteric Disease Surveillance Program

Table of Contents

1. Sample Collection

• Retail Meat
• Agriculture
• Untreated Surface Water
• Human
  

2. Sample Preparation

• Retail Meat
• Agriculture
• Untreated Surface Water

3. Laboratory Methodologies

• 3.1 Campylobacter
  • Retail Meat
  • Agriculture
  • Untreated Surface Water
    • Subtyping (Retail, Agriculture, Water)
  • Human
    • Subtyping (Human)
• 3.2 Salmonella
  • Retail Meat
  • Agriculture
  • Untreated Surface Water
    • Subtyping (Retail, Agriculture, Water)
  • Human
    • Subtyping (Human)
• 3.3 Pathogenic E. coli
  • Retail Meat
  • Agriculture
  • Untreated Surface Water
    • Subtyping (Retail, Agriculture)
  • Human
    • Subtyping (Human)
• 3.4 Yersinia
  • Retail Meat
  • Agriculture
  • Untreated Surface Water
    • Subtyping (Retail, Agriculture, Water)
  • Human
    • Subtyping (Human)
• 3.5 Listeria
  • Retail Meat
  • Agriculture
    • Subtyping (Retail, Agriculture)
• 3.6 Giardia and Cryptosporidium
  • Agriculture
  • Untreated Surface Water
  • Human
• 3.7 Viruses
  • Agriculture
• 3.8 Sources Cited

Appendix

• C-EnterNet Retail Sample Collection Overview
• C-EnterNet Agriculture Sample Collection Overview
• C-EnterNet Surface Water Collection Overview
• C-EnterNet Human Sample Collection Overview